EaMEAD: Activation Energy Prediction of Cytochrome P450 Mediated Metabolism with Effective Atomic Descriptors

References

Kim, Doo Nam, Kwang-Hwi Cho, Won Seok Oh, Chang Joon Lee, Sung Kwang Lee, Jihoon Jung, and Kyoung Tai No. 2009. “EaMEAD: Activation Energy Prediction of Cytochrome P450 Mediated Metabolism with Effective Atomic Descriptors.” Journal of Chemical Information and Modeling 49 (7): 1643–54. doi:10.1021/ci900011g.

Regioselectivity Model

References

Jihoon Jung, Nam Doo Kim, Su Yeon Kim, Inhee Choi, Kwang-Hwi Cho, Won Seok Oh, Doo Nam Kim, and Kyoung Tai No. 2008. “Regioselectivity Prediction of CYP1A2-Mediated Phase I Metabolism” J. Chem. Inf. Model. 48 (5): 1074–80. doi:10.1021/ci800001m.

MPEOE: Partial atomic charge model

References

No, Kyoung Tai, J. Andrew. Grant, and Harold A. Scheraga. 1990. “Determination of Net Atomic Charges Using a Modified Partial Equalization of Orbital Electronegativity Method. 1. Application to Neutral Molecules as Models for Polypeptides.” The Journal of Physical Chemistry 94 (11): 4732–39. doi:10.1021/j100374a066.

No, Kyoung Tai, J. Andrew Grant, Mu Shik Jhon, and Harold A. Scheraga. 1990. “Determination of Net Atomic Charges Using a Modified Partial Equalization of Orbital Electronegativity Method. 2. Application to Ionic and Aromatic Molecules as Models for Polypeptides.” The Journal of Physical Chemistry 94 (11): 4740–46. doi:10.1021/j100374a067.

Park, Je Myung, Kyoung Tai No, Mu Shik Jhon, and Harold A. Scheraga. 1993. “Determination of Net Atomic Charges Using a Modified Partial Equalization of Orbital Electronegativity Method. III. Application to Halogenated and Aromatic Molecules.” Journal of Computational Chemistry 14 (12): 1482–90. doi:10.1002/jcc.540141210.

Park, Je Myung, Oh Young Kwon, Kyoung Tai No, Mu Shik Jhon, and Harold A. Scheraga. 1995. “Determination of Net Atomic Charges Using a Modified Partial Equalization of Orbital Electronegativity Method. IV. Application to Hypervalent Sulfur- and Phosphorus-Containing Molecules.” Journal of Computational Chemistry 16 (8): 1011–26. doi:10.1002/jcc.540160808.

Suk, Jae Eun, and Kyoung Tai No. 1995. “Determination of Net Atomic Charges Using a Modified Partial Equalization of Orbital Electronegativity Method V. Application to Silicon-Containing Organic Molecules and Zeolites” Bulletin of the Korean Chemical Society 16 (10): 915–23.

CDEAP: Atomic polarizability model

References

No, Kyoung Tai, Kwang Hwi Cho, Mu Shik Jhon, and Harold A. Scheraga. 1993. “An Empirical Method to Calculate Average Molecular Polarizabilities from the Dependence of Effective Atomic Polarizabilities on Net Atomic Charge.” Journal of the American Chemical Society 115 (5): 2005–14. doi:10.1021/ja00058a056.0): 915–23.

Protein Type     CYP3A4   CYP1A2   CYP2C9   CYP2D6  

Calculation...

Atom ID Probability
Atom ID Probability